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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0429Polysaccharide biosynthesis protein. (539 aa)    
Predicted Functional Partners:
OSCT_2644
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.899
OSCT_0475
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.895
OSCT_0035
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.876
OSCT_0430
Hypothetical protein.
 
     0.868
OSCT_0476
O-antigen polymerase.
 
  
 0.839
OSCT_0055
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.834
OSCT_0909
Nucleotide sugar dehydrogenase.
  
  
 0.834
OSCT_0486
O-antigen polymerase.
 
  
 0.832
OSCT_1533
O-antigen polymerase.
 
  
 0.828
OSCT_0487
O-antigen polymerase.
 
  
 0.820
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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