Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
OSCT_0439Methicillin resistance protein. (360 aa)    
Predicted Functional Partners:
OSCT_0440
LmbE family protein.
 
     0.837
OSCT_2781
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
  
 
 0.828
OSCT_0823
Hypothetical protein.
    
 0.818
OSCT_0441
HEAT repeat-containing PBS lyase.
       0.805
OSCT_2477
CobB/CobQ domain protein glutamine amidotransferase.
     
  0.773
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
    
 0.768
OSCT_0442
Hypothetical protein.
       0.531
OSCT_0436
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
       0.493
OSCT_0443
Hypothetical protein.
       0.483
OSCT_0437
Putative PAS/PAC sensor protein.
       0.482
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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