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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0441HEAT repeat-containing PBS lyase. (298 aa)    
Predicted Functional Partners:
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
 
  0.923
OSCT_0440
LmbE family protein.
 
    0.913
OSCT_0439
Methicillin resistance protein.
       0.816
OSCT_0971
Hypothetical protein.
  
     0.744
OSCT_3226
Hypothetical protein.
  
     0.742
OSCT_0596
Glycosyl transferase family protein.
  
     0.739
OSCT_0783
Tetratricopeptide TPR_2 repeat protein.
 
     0.731
OSCT_0970
Hypothetical protein.
  
     0.724
OSCT_0681
Peptidase C60 sortase A and B.
  
     0.710
OSCT_0487
O-antigen polymerase.
  
     0.702
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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