STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0442Hypothetical protein. (665 aa)    
Predicted Functional Partners:
OSCT_1227
PAS sensor protein.
    
 0.823
OSCT_0443
Hypothetical protein.
       0.780
OSCT_0029
Response regulator receiver protein.
     
 0.712
OSCT_2430
CheA signal transduction histidine kinase.
     
 0.712
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.599
OSCT_0739
Sensory box histidine kinase/response regulator.
    
 0.592
OSCT_1310
PAS fold family protein.
    
 0.592
OSCT_0441
HEAT repeat-containing PBS lyase.
  
    0.587
OSCT_2221
Multi-sensor hybrid histidine kinase.
    
 0.549
OSCT_0439
Methicillin resistance protein.
       0.531
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.