STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0470Putative WD-repeat containing protein. (1619 aa)    
Predicted Functional Partners:
OSCT_0392
Immunoglobulin I-set domain protein.
  
  0.795
OSCT_0471
Alpha/beta hydrolase fold-containing protein.
   
   0.773
OSCT_0472
Cytochrome c class I.
       0.746
OSCT_1775
TPR domain protein.
  
 
  0.746
OSCT_2800
NB-ARC domain-containing protein.
  
 
  0.743
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.705
OSCT_0474
Hypothetical protein.
       0.702
OSCT_1771
Peptidase C14, caspase catalytic subunit p20.
 
     0.687
OSCT_1950
TPR repeat-containing protein.
  
 
  0.685
OSCT_0061
Hypothetical protein.
  
     0.677
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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