Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0478Hypothetical protein. (357 aa)    
Predicted Functional Partners:
OSCT_0479
Glycosyl transferase group 1.
  
    0.818
OSCT_0480
Hypothetical protein.
  
    0.782
OSCT_0476
O-antigen polymerase.
 
     0.709
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.693
OSCT_0596
Glycosyl transferase family protein.
  
     0.682
OSCT_0783
Tetratricopeptide TPR_2 repeat protein.
 
    0.615
OSCT_2820
Tetratricopeptide TPR_2 repeat protein.
 
     0.608
OSCT_2685
AAA-4 family protein.
 
     0.589
OSCT_2807
roadblock/LC7 family protein.
  
     0.587
OSCT_1006
Hypothetical protein.
 
    0.565
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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