Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0510Hypothetical protein. (244 aa)    
Predicted Functional Partners:
OSCT_1306
Hypothetical protein.
    
 0.915
OSCT_0511
Hypothetical protein.
 
    0.906
OSCT_0512
Phosphoglycerate mutase.
 
     0.814
OSCT_2638
LmbE family protein.
  
     0.738
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
    
   0.728
OSCT_0989
LmbE family protein.
  
     0.656
OSCT_2799
Hypothetical protein.
  
     0.647
OSCT_2896
Glycosyl transferase group 1.
  
     0.646
OSCT_2810
Transcriptional regulator, AsnC family.
  
     0.640
OSCT_2022
SNF2-related helicase.
   
 0.623
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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