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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0510Hypothetical protein. (244 aa)    
Predicted Functional Partners:
OSCT_1306
Hypothetical protein.
    
 0.990
OSCT_0511
Hypothetical protein.
 
    0.911
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
    
   0.819
OSCT_0512
Phosphoglycerate mutase.
 
     0.817
OSCT_2022
SNF2-related helicase.
   
 0.746
OSCT_2638
LmbE family protein.
  
     0.738
OSCT_2844
Histone deacetylase superfamily.
    
  0.732
OSCT_0787
Helicase domain-containing protein.
   
 0.719
OSCT_0942
SNF2-related helicase.
   
 0.719
OSCT_2037
Non-specific serine/threonine protein kinase.
   
 0.719
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.