STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0542Aminotransferase class V. (387 aa)    
Predicted Functional Partners:
OSCT_2072
NifU family SUF system FeS assembly protein.
 
 0.992
OSCT_1488
NifU family SUF system FeS assembly protein.
 
 0.990
OSCT_2074
UBA/THIF-type NAD/FAD binding protein.
   
 0.973
OSCT_2919
Selenide, water dikinase.
  
 0.959
OSCT_3080
Ferredoxin.
  
 0.940
OSCT_3166
Molybdopterin converting factor, subunit 1.
    
 0.922
OSCT_1092
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.912
OSCT_0107
Rrf2 family transcriptional regulator.
  
 
 0.867
OSCT_2146
Rrf2 family transcriptional regulator.
  
 
 0.867
OSCT_3115
Hypothetical protein.
  
 
 0.867
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.