Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0545Polymorphic outer membrane protein. (1409 aa)    
Predicted Functional Partners:
OSCT_0024
Hypothetical protein.
  
 0.708
OSCT_2698
Na-Ca exchanger/integrin-beta4.
  
 0.708
OSCT_3141
YD repeat protein.
  
 0.666
OSCT_0546
UspA domain-containing protein.
       0.556
OSCT_2562
Hypothetical protein.
  
  0.495
OSCT_1616
Glycosyl hydrolase 53 protein.
 
  
 0.481
OSCT_2590
Hypothetical protein.
  
 
  0.466
OSCT_1012
Hypothetical protein.
 
     0.462
OSCT_0769
Hypothetical protein.
 
     0.421
OSCT_1373
Proprotein convertase P.
  
     0.413
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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