Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OSCT_0557Peptidase M23B. (632 aa)    
Predicted Functional Partners:
OSCT_1024
Peptidase M23B.
  
     0.773
OSCT_1070
Peptidase M23B.
  
     0.750
OSCT_0810
Peptidase M23B.
  
     0.721
OSCT_1035
Cell wall hydrolase/autolysin.
 
   
 0.711
OSCT_3220
Hypothetical protein.
  
     0.611
OSCT_2808
TPR repeat-containing protein.
  
     0.598
OSCT_2189
Lytic transglycosylase catalytic.
 
  
 0.596
OSCT_2442
Hypothetical protein.
  
    0.574
OSCT_1481
Peptidase M23B.
  
     0.566
OSCT_2347
Conserved repeat domain protein.
  
     0.547
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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