STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0565Sortase family protein. (289 aa)    
Predicted Functional Partners:
OSCT_0564
Hypothetical protein.
 
     0.871
OSCT_1995
Peptidase C60 sortase A and B.
  
     0.699
OSCT_2129
Hypothetical protein.
  
     0.677
OSCT_1419
Cell envelope-related transcriptional attenuator.
  
   
 0.600
OSCT_0674
Transcription attenuator LytR.
  
   
 0.585
OSCT_2290
Transcription attenuator LytR.
  
   
 0.573
OSCT_2791
Hypothetical protein.
  
     0.559
OSCT_0814
Cell envelope-related transcriptional attenuator.
  
   
 0.547
OSCT_0741
Hypothetical protein.
  
     0.518
OSCT_0566
Aminotransferase class I and II.
 
     0.512
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.