STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0571NAD/NADP octopine/nopaline dehydrogenase. (367 aa)    
Predicted Functional Partners:
OSCT_0570
Cobalamin B12-binding domain-containing protein.
 
     0.943
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.882
OSCT_2317
Dihydroxyacetone kinase, phosphotransfer subunit.
  
 
  0.864
OSCT_1115
Nicotinamidase-like amidase.
 
   0.751
OSCT_1666
Hypothetical protein.
 
 
 0.742
OSCT_0569
Glycosyl transferase group 1.
  
 
  0.733
OSCT_0568
GHMP kinase.
       0.714
OSCT_0507
Beta-ketoacyl synthase.
 
 0.710
OSCT_2314
Glycerol-3-phosphate dehydrogenase, anaerobic, A subunit.
  
 0.631
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.575
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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