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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0575Protein-tyrosine phosphatase. (174 aa)    
Predicted Functional Partners:
OSCT_0576
Alpha/beta hydrolase fold protein.
   
  0.783
OSCT_2395
Hypothetical protein.
   
 0.732
OSCT_2511
Hypothetical protein.
  
 0.729
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.683
OSCT_1193
Hypothetical protein.
   
 0.621
OSCT_0574
Thioesterase superfamily.
       0.603
OSCT_1139
WD-40 repeat-containing protein.
   
 0.569
OSCT_0759
WD-40 repeat-containing protein.
   
 0.540
OSCT_2180
Serine/Threonine protein kinase with WD40 repeats.
   
 0.540
OSCT_2318
Serine/threonine protein kinase with WD40 repeats.
   
 0.540
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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