STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0579N-acetylmuramoyl-L-alanine amidase. (621 aa)    
Predicted Functional Partners:
OSCT_0580
Hypothetical protein.
 
     0.733
OSCT_0581
Signal transduction protein.
       0.611
OSCT_3108
Hypothetical protein.
  
     0.605
OSCT_0232
HEAT repeat-containing PBS lyase.
  
     0.523
OSCT_2967
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.512
OSCT_2624
Hypothetical protein.
 
     0.485
OSCT_1641
Alpha/beta hydrolase fold-containing protein.
  
   
 0.483
OSCT_1113
Hypothetical protein.
  
     0.473
OSCT_2001
Aminoglycoside phosphotransferase.
  
     0.463
OSCT_0557
Peptidase M23B.
  
   
 0.459
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.