Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0635Glycoside hydrolase family protein. (424 aa)    
Predicted Functional Partners:
OSCT_0633
TPR repeat-containing protein.
       0.780
OSCT_0634
TPR repeat-containing protein.
       0.780
OSCT_0012
Polysaccharide deacetylase.
     0.708
OSCT_0632
Hypothetical protein.
       0.686
OSCT_1113
Hypothetical protein.
  
  
  0.486
OSCT_3079
Hypothetical protein.
 
  
 0.476
OSCT_0636
Hypothetical protein.
       0.467
OSCT_2822
YbbR family protein.
  
     0.452
OSCT_0233
Hypothetical protein.
  
 
  0.404
OSCT_2134
Band 7 protein.
  
     0.401
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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