STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0698Inositol 2-dehydrogenase. (345 aa)    
Predicted Functional Partners:
OSCT_0697
Putative periplasmic binding protein and sugar binding domain of the LacI family protein.
 
  
 0.826
OSCT_0695
Putative ABC transporter.
 
  
 0.762
OSCT_0696
Putative branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.729
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.673
OSCT_2286
Nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.655
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.631
OSCT_2299
Xylose isomerase domain-containing protein.
  
 
 0.551
OSCT_1224
Monosaccharide-transporting ATPase.
 
  
 0.550
OSCT_3141
YD repeat protein.
  
 
 0.540
OSCT_1014
Potassium channel, beta subunit (oxidoreductase).
 
 
 0.526
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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