Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OSCT_0700AMP-dependent synthetase and ligase. (648 aa)    
Predicted Functional Partners:
OSCT_0699
ABC transporter related protein.
    0.919
OSCT_0507
Beta-ketoacyl synthase.
  
 0.900
OSCT_0703
ABC-type branched-chain amino acid transport systems periplasmic component-like protein.
 
    0.859
OSCT_0704
ABC transporter related protein.
    0.859
OSCT_0705
Coenzyme F390 synthetase-like protein.
 
    0.857
OSCT_1227
PAS sensor protein.
  
 
  0.845
OSCT_0702
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.836
OSCT_0701
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.825
OSCT_2917
AMP-dependent synthetase and ligase.
  
 
 0.804
OSCT_3094
acetyl-CoA carboxylase, biotin carboxylase.
    
 0.794
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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