STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0700AMP-dependent synthetase and ligase. (648 aa)    
Predicted Functional Partners:
OSCT_0699
ABC transporter related protein.
    0.917
OSCT_0507
Beta-ketoacyl synthase.
  
 0.914
OSCT_2917
AMP-dependent synthetase and ligase.
 
 
0.909
OSCT_1227
PAS sensor protein.
  
 
  0.895
OSCT_0703
ABC-type branched-chain amino acid transport systems periplasmic component-like protein.
 
    0.858
OSCT_0704
ABC transporter related protein.
    0.854
OSCT_0705
Coenzyme F390 synthetase-like protein.
 
    0.852
OSCT_0702
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.842
OSCT_0701
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.822
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.791
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.