STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0730FAD dependent oxidoreductase. (502 aa)    
Predicted Functional Partners:
OSCT_0944
Squalene/phytoene synthase.
 
 
 0.968
OSCT_0731
Hypothetical protein.
       0.773
OSCT_0729
Hypothetical protein.
       0.737
OSCT_2899
Glycosyl transferase family 2.
 
 
 0.702
OSCT_2122
Hypothetical protein.
 
  
 0.688
OSCT_2914
Amine oxidase.
 
  
 0.623
OSCT_1538
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
 0.573
OSCT_0246
Magnesium chelatase.
  
 
 0.524
OSCT_0732
Hypothetical protein.
       0.524
OSCT_2341
Magnesium chelatase ATPase subunit D; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 
 0.524
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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