STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0735ABC-2 type transporter. (290 aa)    
Predicted Functional Partners:
OSCT_0421
ABC transporter related protein.
 
 0.929
OSCT_1810
Von Willebrand factor type A.
 
     0.822
OSCT_0422
Hypothetical protein.
 
    0.812
OSCT_1340
Von Willebrand factor type A.
 
     0.792
OSCT_1965
Hypothetical protein.
 
     0.779
OSCT_1968
Hypothetical protein.
 
     0.779
OSCT_1811
Hypothetical protein.
 
     0.778
OSCT_0736
Hypothetical protein.
       0.773
OSCT_0737
Hypothetical protein.
       0.773
OSCT_1967
Protein of unknown function DUF58.
 
     0.754
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.