STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0759WD-40 repeat-containing protein. (635 aa)    
Predicted Functional Partners:
OSCT_2675
Protein phosphatase 2C-like protein.
 0.857
OSCT_2695
Protein phosphatase 2C-like protein.
 0.857
OSCT_2676
Protein phosphatase 2C-like protein.
 
 0.856
OSCT_2729
Protein serine/threonine phosphatase.
 0.856
OSCT_0392
Immunoglobulin I-set domain protein.
  
 0.853
OSCT_1227
PAS sensor protein.
  
 0.850
OSCT_2082
Peptidase S1 and S6 chymotrypsin/Hap.
 
 0.819
OSCT_1984
TPR repeat-containing protein.
 0.809
OSCT_0275
Hypothetical protein.
  
    0.777
OSCT_0760
Peptidase S45 penicillin amidase.
       0.773
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.