Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0786Hypothetical protein. (1035 aa)    
Predicted Functional Partners:
OSCT_0787
Helicase domain-containing protein.
 
     0.863
OSCT_1214
Helicase domain-containing protein.
 
     0.740
OSCT_0788
Hypothetical protein.
 
     0.701
OSCT_0789
Hypothetical protein.
 
     0.599
OSCT_2181
Hypothetical protein.
  
     0.561
rsmI
uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.557
OSCT_0916
fdxN element excision controlling factor XisH.
  
     0.545
OSCT_2022
SNF2-related helicase.
 
   
 0.492
OSCT_0785
Hypothetical protein.
       0.480
OSCT_1915
Hypothetical protein.
  
     0.480
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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