STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0809TPR repeat-containing protein. (290 aa)    
Predicted Functional Partners:
OSCT_2899
Glycosyl transferase family 2.
    
  0.926
OSCT_2820
Tetratricopeptide TPR_2 repeat protein.
 
  
 0.764
OSCT_2334
Histamine N-methyltransferase A.
 
     0.749
OSCT_1146
Putative RNA methylase.
 
     0.692
OSCT_2304
Putative GAF sensor protein.
 
  
 0.625
OSCT_2808
TPR repeat-containing protein.
 
  
  0.618
OSCT_2435
TPR repeat-containing protein.
 
  
  0.612
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.611
OSCT_2840
Putative RNA methylase.
 
     0.595
OSCT_3007
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
  
  0.590
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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