OSCT_0819 protein (Oscillochloris trichoides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OSCT_0819

LysR substrate-binding; Belongs to the LysR transcriptional regulatory family. (292 aa)

Predicted Functional Partners:

rpoA

0.857

rpoB

0.839

rpoC

0.808

OSCT_0551

0.688

OSCT_2673

0.617

guaA

0.560

OSCT_2995

0.558

OSCT_2704

0.549

OSCT_0558

0.526

OSCT_0992

0.526

Your Current Organism:

Oscillochloris trichoides

NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSCT_0551	OSCT_0819	OSCT_0551	OSCT_0819	Glutamate synthase (ferredoxin).	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	0.688
OSCT_0551	OSCT_2673	OSCT_0551	OSCT_2673	Glutamate synthase (ferredoxin).	Helix-turn-helix domain-containing protein.	0.939
OSCT_0551	OSCT_2704	OSCT_0551	OSCT_2704	Glutamate synthase (ferredoxin).	Cyclic nucleotide-binding protein.	0.952
OSCT_0551	OSCT_2995	OSCT_0551	OSCT_2995	Glutamate synthase (ferredoxin).	Cupin 2 domain-containing protein.	0.533
OSCT_0551	guaA	OSCT_0551	OSCT_1004	Glutamate synthase (ferredoxin).	Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.	0.962
OSCT_0551	rpoA	OSCT_0551	OSCT_0175	Glutamate synthase (ferredoxin).	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.409
OSCT_0551	rpoB	OSCT_0551	OSCT_2953	Glutamate synthase (ferredoxin).	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.511
OSCT_0551	rpoC	OSCT_0551	OSCT_2955	Glutamate synthase (ferredoxin).	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.587
OSCT_0558	OSCT_0819	OSCT_0558	OSCT_0819	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	0.526
OSCT_0558	OSCT_2673	OSCT_0558	OSCT_2673	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Helix-turn-helix domain-containing protein.	0.838
OSCT_0558	guaA	OSCT_0558	OSCT_1004	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.	0.438
OSCT_0558	rpoA	OSCT_0558	OSCT_0175	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.792
OSCT_0558	rpoB	OSCT_0558	OSCT_2953	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.842
OSCT_0558	rpoC	OSCT_0558	OSCT_2955	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.781
OSCT_0819	OSCT_0551	OSCT_0819	OSCT_0551	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	Glutamate synthase (ferredoxin).	0.688
OSCT_0819	OSCT_0558	OSCT_0819	OSCT_0558	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.526
OSCT_0819	OSCT_0992	OSCT_0819	OSCT_0992	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	Sigma-70 family RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.526
OSCT_0819	OSCT_2673	OSCT_0819	OSCT_2673	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	Helix-turn-helix domain-containing protein.	0.617
OSCT_0819	OSCT_2704	OSCT_0819	OSCT_2704	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	Cyclic nucleotide-binding protein.	0.549
OSCT_0819	OSCT_2995	OSCT_0819	OSCT_2995	LysR substrate-binding; Belongs to the LysR transcriptional regulatory family.	Cupin 2 domain-containing protein.	0.558

page 1 of 5

Server load: medium (80%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About