STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0819LysR substrate-binding; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
OSCT_0551
Glutamate synthase (ferredoxin).
  
  
 0.687
OSCT_2673
Helix-turn-helix domain-containing protein.
 
  
 0.608
OSCT_2995
Cupin 2 domain-containing protein.
 
  
 0.559
OSCT_2424
FeoA family protein.
  
 
 0.533
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
     
 0.523
OSCT_0820
DNA adenine methylase.
       0.515
OSCT_0821
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
       0.515
OSCT_0521
ABC transporter integral membrane protein.
  
 
  0.471
OSCT_0426
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
   
 
 0.468
OSCT_1424
AMP-dependent synthetase and ligase.
  
  
 0.446
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.