STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0839Alpha amylase catalytic region; Belongs to the glycosyl hydrolase 13 family. (614 aa)    
Predicted Functional Partners:
OSCT_2194
Hypothetical protein.
 
 0.985
OSCT_2028
Trehalose synthase.
 
0.917
OSCT_1013
Glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.863
OSCT_3180
Alpha-glucan phosphorylase.
  
 0.843
OSCT_2457
Beta-galactosidase.
 
 
 0.831
OSCT_1382
Alpha amylase catalytic region.
  
  
 
0.830
OSCT_2305
Alpha amylase catalytic region.
  
  
 
0.798
OSCT_1379
Extracellular solute-binding protein family 1.
 
  
 0.793
OSCT_1740
Hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
     
 0.782
OSCT_1616
Glycosyl hydrolase 53 protein.
  
 
 0.753
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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