STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0901RNP-1 like RNA-binding protein. (99 aa)    
Predicted Functional Partners:
OSCT_1909
NADH dehydrogenase (quinone).
   
   0.902
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.873
OSCT_0141
Beta-lactamase domain protein.
   
 0.816
OSCT_2022
SNF2-related helicase.
  
 0.769
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.758
OSCT_2009
Putative NADH-ubiquinone oxidoreductase.
   
   0.744
OSCT_3080
Ferredoxin.
    
 
 0.741
OSCT_1910
Bidirectional hydrogenase complex protein HoxU.
    
   0.740
OSCT_2992
Plastoquinol--plastocyanin reductase.
   
   0.735
OSCT_2931
NADH-quinone oxidoreductase, B subunit.
    
   0.734
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
Server load: low (28%) [HD]