STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0910Peptidase S8 and S53 subtilisin kexin sedolisin. (1596 aa)    
Predicted Functional Partners:
OSCT_2502
Regulator of chromosome condensation RCC1.
  
  0.713
OSCT_0392
Immunoglobulin I-set domain protein.
 
 0.701
OSCT_2698
Na-Ca exchanger/integrin-beta4.
 
 
  0.663
OSCT_3079
Hypothetical protein.
  
  0.660
OSCT_0911
Tetratricopeptide TPR_4 containing protein.
 
     0.650
OSCT_0624
Cyclic nucleotide-binding protein.
  
    0.624
OSCT_0859
FG-GAP repeat protein.
  
  0.616
OSCT_0912
Hypothetical protein.
       0.572
OSCT_0734
Hypothetical protein.
 
    0.560
OSCT_1248
Peptidase C1A papain.
  
     0.532
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.