STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0944Squalene/phytoene synthase. (320 aa)    
Predicted Functional Partners:
OSCT_0677
Phytoene desaturase.
 
 0.998
OSCT_0163
Phytoene desaturase.
 
 0.988
OSCT_0730
FAD dependent oxidoreductase.
 
 
 0.968
OSCT_2469
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.950
OSCT_3106
Geranylgeranyl reductase.
 
 
 0.947
OSCT_2334
Histamine N-methyltransferase A.
    
 0.923
OSCT_1568
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.913
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
  0.910
OSCT_1909
NADH dehydrogenase (quinone).
     
 0.853
OSCT_0644
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.831
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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