STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0981Cytochrome c-type biogenesis protein CcmB. (244 aa)    
Predicted Functional Partners:
OSCT_0978
Cytochrome c assembly protein.
 
 0.999
OSCT_0982
Heme exporter protein CcmA.
 
 0.999
OSCT_0977
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.930
OSCT_0976
Cytochrome c assembly protein.
 
  
 0.877
OSCT_0984
Hypothetical protein.
 
     0.580
OSCT_1458
Hypothetical protein.
  
     0.547
OSCT_0983
Peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
       0.518
OSCT_1012
Hypothetical protein.
  
     0.465
OSCT_0652
Hypothetical protein.
  
     0.414
OSCT_2236
Histidine kinase.
  
     0.414
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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