Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1006Hypothetical protein. (807 aa)    
Predicted Functional Partners:
OSCT_2582
Hypothetical protein.
 
    0.864
OSCT_0596
Glycosyl transferase family protein.
 
     0.781
OSCT_0597
NHL repeat-containing protein.
 
     0.750
OSCT_0897
DNA binding domain protein, excisionase family.
  
     0.676
OSCT_0741
Hypothetical protein.
  
     0.671
OSCT_2581
Hypothetical protein.
 
    0.631
OSCT_2818
IstB domain protein ATP-binding protein.
  
     0.624
OSCT_0440
LmbE family protein.
  
     0.608
OSCT_2479
Hypothetical protein.
  
     0.597
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.576
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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