STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1013Glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 31 family. (1015 aa)    
Predicted Functional Partners:
OSCT_2028
Trehalose synthase.
 
  
 0.872
OSCT_2457
Beta-galactosidase.
 
 0.872
OSCT_1616
Glycosyl hydrolase 53 protein.
  
 0.868
OSCT_0839
Alpha amylase catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.863
OSCT_1382
Alpha amylase catalytic region.
 
  
 0.845
OSCT_2194
Hypothetical protein.
    
 0.823
OSCT_2305
Alpha amylase catalytic region.
    
 0.800
rpsG
Hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.738
OSCT_1254
Glycosyltransferase 36.
     
 0.689
OSCT_0336
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
   0.667
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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