STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1024Peptidase M23B. (460 aa)    
Predicted Functional Partners:
OSCT_2453
Peptidase M23B.
  
     0.775
OSCT_0557
Peptidase M23B.
  
     0.773
OSCT_1070
Peptidase M23B.
  
     0.762
OSCT_0810
Peptidase M23B.
  
     0.730
OSCT_3223
Hypothetical protein.
  
     0.630
OSCT_1106
Glycosyl transferase family protein.
  
     0.602
OSCT_2189
Lytic transglycosylase catalytic.
 
  
 0.538
OSCT_1022
parB-like partition protein; Belongs to the ParB family.
       0.532
OSCT_1023
Cobyrinic acid ac-diamide synthase.
       0.528
OSCT_2889
Hypothetical protein.
  
     0.483
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.