STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1035Cell wall hydrolase/autolysin. (348 aa)    
Predicted Functional Partners:
OSCT_2189
Lytic transglycosylase catalytic.
 
  
 0.941
OSCT_3190
NLP/P60 protein.
 
 
 0.872
OSCT_2505
Hypothetical protein.
  
 
   0.871
OSCT_1482
TPR repeat-containing protein.
 
 
   0.834
OSCT_0604
Hypothetical protein.
  
    0.728
OSCT_1037
Sortase family protein.
  
     0.715
OSCT_0557
Peptidase M23B.
 
   
 0.711
OSCT_2779
Rhomboid family protein.
   
   0.710
OSCT_2808
TPR repeat-containing protein.
  
 
   0.710
OSCT_2019
Helicase.
  
 0.684
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.