STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1037Sortase family protein. (350 aa)    
Predicted Functional Partners:
OSCT_1038
Hypothetical protein.
       0.798
OSCT_1039
Methyltransferase type 12.
       0.747
OSCT_2347
Conserved repeat domain protein.
 
  
 0.732
OSCT_1035
Cell wall hydrolase/autolysin.
  
     0.715
OSCT_0970
Hypothetical protein.
 
     0.657
OSCT_1995
Peptidase C60 sortase A and B.
  
     0.635
OSCT_2861
WD40 domain-containing protein.
  
     0.628
OSCT_2808
TPR repeat-containing protein.
  
     0.617
OSCT_0813
Peptidase S9 prolyl oligopeptidase.
  
     0.597
OSCT_1417
N-acetylmuramoyl-L-alanine amidase.
     0.595
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.