Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
OSCT_1060Regulatory protein MarR. (175 aa)    
Predicted Functional Partners:
OSCT_1061
NAD-dependent epimerase/dehydratase.
       0.741
OSCT_1062
PAS sensor protein.
       0.741
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.741
OSCT_1064
Hypothetical protein.
       0.741
OSCT_1065
Hypothetical protein.
       0.741
OSCT_2591
Fe-S-cluster-containing hydrogenase components 1-like protein.
     
  0.657
OSCT_2664
Fe-S-cluster-containing hydrogenase components 1-like protein.
     
  0.657
OSCT_1066
Cyclase/dehydrase.
       0.471
OSCT_1310
PAS fold family protein.
  
  
 0.425
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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