Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1069ABC-2 type transporter. (251 aa)    
Predicted Functional Partners:
OSCT_1068
Daunorubicin resistance ABC transporter ATPase subunit.
 
 
 0.971
OSCT_1067
Hypothetical protein.
       0.745
OSCT_0605
ABC transporter related protein.
 
 
 0.703
OSCT_1314
Nitroreductase.
  
  
 0.657
OSCT_3116
NADH dehydrogenase.
  
  
 0.657
OSCT_0964
ABC transporter related protein.
 
 
 0.642
OSCT_0041
ABC transporter related protein.
 
 
 0.631
OSCT_0421
ABC transporter related protein.
 
 
 0.631
OSCT_0042
ABC transporter related protein.
 
 
 0.630
OSCT_2734
ABC transporter related protein.
 
 
 0.626
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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