STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1077C-20 methyltransferase BchU. (362 aa)    
Predicted Functional Partners:
OSCT_1076
Bacteriochlorophyll/chlorophyll synthetase.
 
  
  0.883
OSCT_3080
Ferredoxin.
  
     0.708
OSCT_1078
Putative lipase.
 
     0.686
OSCT_1079
Putative lipase.
 
     0.684
OSCT_1082
Alpha/beta hydrolase fold protein.
 
     0.651
OSCT_2345
Hypothetical protein.
  
  
 0.630
OSCT_1512
Radical SAM domain protein.
  
 
  0.585
OSCT_1511
Elongator protein 3/MiaB/NifB.
  
 
  0.584
OSCT_2344
Alcohol dehydrogenase.
  
   
 0.581
OSCT_1248
Peptidase C1A papain.
  
     0.567
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.