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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1078Putative lipase. (225 aa)    
Predicted Functional Partners:
OSCT_1079
Putative lipase.
 
    
0.718
OSCT_2275
Hypothetical protein.
  
     0.691
OSCT_1077
C-20 methyltransferase BchU.
 
     0.688
OSCT_0232
HEAT repeat-containing PBS lyase.
  
     0.657
OSCT_1076
Bacteriochlorophyll/chlorophyll synthetase.
 
     0.633
OSCT_1082
Alpha/beta hydrolase fold protein.
 
 
  0.627
OSCT_2899
Glycosyl transferase family 2.
   
 
  0.624
OSCT_1424
AMP-dependent synthetase and ligase.
  
 0.573
OSCT_3080
Ferredoxin.
  
     0.555
OSCT_2081
Heat repeat-containing PBS lyase.
  
     0.528
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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