STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1092Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family. (146 aa)    
Predicted Functional Partners:
OSCT_0542
Aminotransferase class V.
 
 
 0.912
OSCT_2072
NifU family SUF system FeS assembly protein.
 
 
 0.889
OSCT_1488
NifU family SUF system FeS assembly protein.
  
 
 0.874
OSCT_1485
FeS assembly ATPase SufC.
  
 
 0.636
OSCT_3080
Ferredoxin.
  
 0.630
OSCT_2357
Glutaredoxin-like protein.
  
  
 0.618
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.611
OSCT_2887
Alpha-ketoglutarate decarboxylase.
  
  
 0.543
OSCT_2992
Plastoquinol--plastocyanin reductase.
   
 
 0.520
OSCT_2966
Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
 
 0.506
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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