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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1100Hypothetical protein. (315 aa)    
Predicted Functional Partners:
OSCT_1099
Glycosyl transferase family protein.
 
 
  0.866
OSCT_1098
Hypothetical protein.
  
    0.798
OSCT_2630
Multi-sensor signal transduction histidine kinase.
 
    0.745
OSCT_2680
Hypothetical protein.
  
     0.730
OSCT_2442
Hypothetical protein.
 
    0.726
OSCT_2791
Hypothetical protein.
  
     0.715
OSCT_2808
TPR repeat-containing protein.
  
     0.714
OSCT_2820
Tetratricopeptide TPR_2 repeat protein.
 
     0.709
OSCT_1113
Hypothetical protein.
  
  
  0.694
OSCT_0232
HEAT repeat-containing PBS lyase.
  
     0.676
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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