Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1139WD-40 repeat-containing protein. (436 aa)    
Predicted Functional Partners:
OSCT_0392
Immunoglobulin I-set domain protein.
 
  0.937
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
  0.872
OSCT_3007
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
 0.841
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
  0.832
OSCT_2167
Serine/threonine protein kinase.
  
 
 0.830
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
  0.821
OSCT_2987
AAA ATPase.
 
 
  0.814
OSCT_2022
SNF2-related helicase.
   
 0.808
OSCT_2085
Adenylate/guanylate cyclase.
 
 
  0.808
OSCT_0452
Adenylate/guanylate cyclase.
 
 
  0.805
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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