STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1185Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family. (1083 aa)    
Predicted Functional Partners:
OSCT_1984
TPR repeat-containing protein.
   
 0.715
OSCT_2082
Peptidase S1 and S6 chymotrypsin/Hap.
   
 0.715
OSCT_1183
Integral membrane sensor signal transduction histidine kinase.
     
 0.639
OSCT_1184
Response regulator receiver protein.
       0.636
OSCT_0480
Hypothetical protein.
 
     0.621
OSCT_1574
Serine/threonine protein kinase with TPR repeats.
  
 
 0.597
OSCT_1186
Radical SAM domain-containing protein.
       0.523
OSCT_1730
TPR repeat-containing protein.
  
 
 0.518
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
   
 
 0.492
OSCT_2189
Lytic transglycosylase catalytic.
  
  
 0.477
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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