Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OSCT_1218Unnamed protein product. (1498 aa)    
Predicted Functional Partners:
OSCT_1214
Helicase domain-containing protein.
 
     0.866
OSCT_2022
SNF2-related helicase.
 
   
 0.773
OSCT_1215
ATPase.
 
     0.755
OSCT_0529
Hypothetical protein.
 
   
 0.726
OSCT_0555
Putative DNA helicase.
 
     0.645
OSCT_2026
Helicase-like protein.
 
   
 0.635
OSCT_2025
Hypothetical protein.
 
     0.608
OSCT_0554
Hypothetical protein.
 
     0.601
OSCT_0787
Helicase domain-containing protein.
 
     0.575
rsmI
uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.557
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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