STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1246Cyclic nucleotide-regulated small mechanosensitive ion channel. (343 aa)    
Predicted Functional Partners:
OSCT_0551
Glutamate synthase (ferredoxin).
    
 0.915
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
 
 0.849
OSCT_1247
Hypothetical protein.
       0.773
OSCT_1227
PAS sensor protein.
   
 0.695
OSCT_0648
GAF sensor hybrid histidine kinase.
 
 
 0.683
OSCT_2849
Response regulator receiver.
  
 0.651
OSCT_1234
PAS sensor protein.
   
 0.641
OSCT_1932
PAS fold family protein.
   
 0.641
OSCT_1228
Multi-sensor signal transduction histidine kinase.
   
 0.619
OSCT_1310
PAS fold family protein.
   
 
 0.612
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.