Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OSCT_1261Permease domain protein. (387 aa)    
Predicted Functional Partners:
OSCT_1260
ABC transporter ATP-binding protein.
 
 0.971
OSCT_0806
Probable ABC transporter ATP-binding protein.
  
 0.654
OSCT_1330
ABC transporter related protein.
  
 0.654
OSCT_1741
ABC transporter (glutamine transport ATP-binding protein).
  
 0.654
OSCT_2139
ABC transporter related protein.
  
 0.654
macB
ABC transporter related protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 0.654
OSCT_2605
ABC transporter related protein.
  
 0.654
OSCT_2505
Hypothetical protein.
   
 
 0.597
OSCT_1914
Peptidase C11 clostripain.
  
     0.540
OSCT_1262
Glycosyl transferase, group 1.
       0.497
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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