STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1305SWIM zinc finger domain protein. (445 aa)    
Predicted Functional Partners:
OSCT_1306
Hypothetical protein.
     0.993
OSCT_1311
VWA containing CoxE family protein.
     0.952
OSCT_1307
ATPase associated with various cellular activities AAA_5.
 
     0.932
OSCT_1308
Hypothetical protein.
 
     0.932
OSCT_1304
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
       0.572
OSCT_1303
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.543
OSCT_1302
Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.508
OSCT_0575
Protein-tyrosine phosphatase.
  
     0.458
OSCT_1309
Response regulator receiver.
       0.442
OSCT_1310
PAS fold family protein.
       0.422
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.