STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1314Nitroreductase. (200 aa)    
Predicted Functional Partners:
OSCT_1313
F420-dependent oxidoreductase.
  
  0.989
OSCT_1359
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
 
 0.855
OSCT_2074
UBA/THIF-type NAD/FAD binding protein.
    
 0.766
OSCT_0044
ABC-2 type transporter.
  
  
 0.657
OSCT_1069
ABC-2 type transporter.
  
  
 0.657
OSCT_2403
precorrin-3B C17-methyltransferase.
    
 0.599
OSCT_1607
LPPG:FO 2-phospho-L-lactate transferase.
 
 
 0.596
OSCT_1315
Hypothetical protein.
       0.592
OSCT_1452
Flavin reductase domain protein FMN-binding.
 
 
 0.586
OSCT_1639
Hypothetical protein.
  
  
 0.579
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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