Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1333Hypothetical protein. (436 aa)    
Predicted Functional Partners:
OSCT_1334
ATPase.
  
 0.904
OSCT_1046
RDD domain-containing protein.
 
    0.798
OSCT_2757
Hypothetical protein.
 
  
 0.798
OSCT_2044
Hypothetical protein.
 
     0.703
OSCT_2045
Hypothetical protein.
 
     0.698
OSCT_1812
Hypothetical protein.
  
     0.609
OSCT_1966
ATPase.
  
 0.596
OSCT_0449
ATPase associated with various cellular activities AAA_3.
  
 0.538
OSCT_1614
Hypothetical protein.
  
     0.432
OSCT_1332
TetR family transcriptional regulator.
       0.423
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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