Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OSCT_1370Cna B domain-containing protein. (838 aa)    
Predicted Functional Partners:
OSCT_2698
Na-Ca exchanger/integrin-beta4.
 
 0.843
OSCT_3141
YD repeat protein.
 
 0.763
OSCT_0024
Hypothetical protein.
  
 0.708
OSCT_1371
Hypothetical protein.
   
 
 0.702
OSCT_2562
Hypothetical protein.
 
  0.642
OSCT_2465
Probable aggregation factor core protein MAFp3, isoform C.
  
     0.586
OSCT_0809
TPR repeat-containing protein.
 
    0.553
OSCT_1267
SLEI family.
 
 
   0.461
OSCT_0392
Immunoglobulin I-set domain protein.
 
  
0.452
OSCT_1775
TPR domain protein.
  
 
   0.436
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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