STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_1417N-acetylmuramoyl-L-alanine amidase. (801 aa)    
Predicted Functional Partners:
OSCT_2698
Na-Ca exchanger/integrin-beta4.
 
 0.777
OSCT_0971
Hypothetical protein.
  
     0.754
OSCT_3141
YD repeat protein.
 
 0.739
OSCT_0652
Hypothetical protein.
  
     0.733
OSCT_0487
O-antigen polymerase.
  
     0.726
OSCT_2442
Hypothetical protein.
  
     0.723
OSCT_0564
Hypothetical protein.
  
     0.717
OSCT_0024
Hypothetical protein.
  
 0.708
OSCT_2685
AAA-4 family protein.
  
     0.702
OSCT_0681
Peptidase C60 sortase A and B.
 
     0.700
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.