OSCT_1427 protein (Oscillochloris trichoides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OSCT_1427

Polar amino acid ABC transporter, inner membrane subunit. (266 aa)

Predicted Functional Partners:

OSCT_1426

0.999

OSCT_1652

0.996

OSCT_1428

0.986

OSCT_1654

0.815

OSCT_0464

0.796

OSCT_1655

0.786

OSCT_1997

0.760

OSCT_2139

0.700

OSCT_1260

0.682

OSCT_2605

0.670

Your Current Organism:

Oscillochloris trichoides

NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
OSCT_0464	OSCT_1426	Putative extracellular solute-binding protein.	ABC transporter related protein.	0.768
OSCT_0464	OSCT_1427	Putative extracellular solute-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.796
OSCT_0464	OSCT_1428	Putative extracellular solute-binding protein.	Extracellular solute-binding protein.	0.525
OSCT_0464	OSCT_1652	Putative extracellular solute-binding protein.	ABC transporter related protein.	0.738
OSCT_0464	OSCT_1654	Putative extracellular solute-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.596
OSCT_1260	OSCT_1427	ABC transporter ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.682
OSCT_1426	OSCT_0464	ABC transporter related protein.	Putative extracellular solute-binding protein.	0.768
OSCT_1426	OSCT_1427	ABC transporter related protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.999
OSCT_1426	OSCT_1428	ABC transporter related protein.	Extracellular solute-binding protein.	0.957
OSCT_1426	OSCT_1654	ABC transporter related protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.946
OSCT_1426	OSCT_1655	ABC transporter related protein.	Extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.	0.935
OSCT_1426	OSCT_1997	ABC transporter related protein.	Extracellular solute-binding protein.	0.885
OSCT_1427	OSCT_0464	Polar amino acid ABC transporter, inner membrane subunit.	Putative extracellular solute-binding protein.	0.796
OSCT_1427	OSCT_1260	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter ATP-binding protein.	0.682
OSCT_1427	OSCT_1426	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter related protein.	0.999
OSCT_1427	OSCT_1428	Polar amino acid ABC transporter, inner membrane subunit.	Extracellular solute-binding protein.	0.986
OSCT_1427	OSCT_1652	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter related protein.	0.996
OSCT_1427	OSCT_1654	Polar amino acid ABC transporter, inner membrane subunit.	Polar amino acid ABC transporter, inner membrane subunit.	0.815
OSCT_1427	OSCT_1655	Polar amino acid ABC transporter, inner membrane subunit.	Extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.	0.786
OSCT_1427	OSCT_1997	Polar amino acid ABC transporter, inner membrane subunit.	Extracellular solute-binding protein.	0.760

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

43

average node degree:

7.82

avg. local clustering coefficient:

0.927

expected number of edges:

11

PPI enrichment p-value:

1.65e-13

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006032

Chitin catabolic process

3 of 46

2.17

1.91

0.0013

GO:0005975

Carbohydrate metabolic process

5 of 391

1.47

1.67

0.00017

GO:0000272

Polysaccharide catabolic process

3 of 132

1.72

1.37

0.0051

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004553

Hydrolase activity, hydrolyzing O-glycosyl compounds

5 of 189

1.78

2.82

2.09e-06

GO:0004568

Chitinase activity

3 of 38

2.26

2.41

0.00022

GO:0008061

Chitin binding

3 of 49

2.15

2.24

0.00034

GO:0102148

N-acetyl-beta-D-galactosaminidase activity

2 of 8

2.76

1.89

0.0022

GO:0004563

beta-N-acetylhexosaminidase activity

2 of 8

2.76

1.89

0.0022

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005576

Extracellular region

5 of 432

1.42

1.7

6.50e-05

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:21184821

(2011) Inhibition of 2,4-dinitrofluorobenzene-induced atopic dermatitis by topical application of the butanol extract of Cordyceps bassiana in NCNga mice.

2 of 7

2.82

2.05

0.0013

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:16527

Glycosyl hydrolases family 18, and beta-Lactam resistance

5 of 15

2.88

7.31

1.73e-11

CL:16544

Glycosyl hydrolases family 18

3 of 6

3.06

4.43

5.55e-07

CL:16530

beta-Lactam resistance, and Beta-acetyl hexosaminidase like

2 of 5

2.96

2.36

0.00049

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00520

Amino sugar and nucleotide sugar metabolism

5 of 177

1.81

3.25

1.49e-07

map00604

Glycosphingolipid biosynthesis - ganglio series

2 of 13

2.55

2.04

0.0012

map00603

Glycosphingolipid biosynthesis - globo and isoglobo series

2 of 19

2.38

1.92

0.0016

map00511

Other glycan degradation

2 of 22

2.32

1.9

0.0016

map00531

Glycosaminoglycan degradation

2 of 29

2.2

1.78

0.0022

(more ...)

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-2160916

Hyaluronan uptake and degradation

2 of 9

2.71

1.56

0.0065

MAP-2024101

CS/DS degradation

2 of 8

2.76

1.56

0.0065

MAP-1793185

Chondroitin sulfate/dermatan sulfate metabolism

2 of 8

2.76

1.56

0.0065

MAP-2022857

Keratan sulfate degradation

2 of 13

2.55

1.54

0.0065

MAP-1638074

Keratan sulfate/keratin metabolism

2 of 13

2.55

1.54

0.0065

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009277

Fungal-type cell wall

3 of 48

2.16

2.03

0.00081

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0326

Glycosidase

4 of 72

2.1

3.37

2.15e-06

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00704

Glycosyl hydrolases family 18

3 of 13

2.72

3.23

2.32e-05

PF14845

Beta-acetyl hexosaminidase like

2 of 3

3.18

2.23

0.00079

PF00728

Glycosyl hydrolase family 20, catalytic domain

2 of 9

2.71

1.8

0.0029

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR017853

Glycoside hydrolase superfamily

5 of 117

1.99

3.53

3.60e-07

IPR001223

Glycoside hydrolase family 18, catalytic domain

3 of 29

2.37

2.4

0.00028

IPR029019

Beta-hexosaminidase, eukaryotic type, N-terminal

2 of 3

3.18

2.05

0.0014

IPR025705

Beta-hexosaminidase

2 of 9

2.71

1.58

0.0060

IPR015883

Glycoside hydrolase family 20, catalytic domain

2 of 9

2.71

1.58

0.0060

(more ...)

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About